Mario Cannataro (chair), University Magna Graecia of Catanzaro, Italy
9:00 Epidemic Data Mining: Global Knowledge without Global Communication,
Invited speaker: Giuseppe Di Fatta, University of Reading, UK
10:00 Heterogeneous Platforms Programming for Faster Medical Imaging Processing
Renan Sales Barros, Sytse van Geldermalsen, A. M. Boers, Adam S. Z. Belloum, Henk A. Marquering, Silvia D. Olabarriaga
10:30 - 11:00 Coffee Break
11:00 Transparent Incremental Updates for Genomics Data Analysis Pipelines
Edvard Pedersen, Nils P. Willassen, Lars Ailo Bongo
11:30 msPar: A Parallel Coalescent Simulator
Carlos Montemui�o, Antonio Espinosa, Juan Carlos Moure, Gonzalo Vera Rodr�guez, Sebasti�n Ramos-Onsins, Porfidio Hern�ndez Bud�
12:00 Panel on
High Performance Bioinformatics and Biomedicine
Chair: Mario Cannataro
Panelists: Renan Sales Barros, Giuseppe Di Fatta, Antonio Espinosa, Edvard
Pedersen
The goal of the
panel is to discuss emerging topics and problems regarding the application of
High Performance Computing techniques, such as GPU, Grid and Cloud Computing,
to biomedical applications, bioinformatics and systems biology.
The panelists will voice their opinions about topics like:
- Trends in data mining for e-science: parallel data mining, workflow development environments, data science
- High Performance Computing for medical imaging in acute care
- Cooperation between the biology and computer science groups
- Apache Hadoop and Google Grid Engine for bioinformatics
- Managing a small-scale cluster for bioinformatics
- Workflow management for bioinformatics
- Porting genomic sequence alignment into Hadoop and GPU environments