Tuesday 28th August, 2012

09:30 - 11:00 SESSION 1 - High Performance Bioinformatics and Systems Biology

9.30-10-00      On the Parallelization of the SProt Measure and the TM-score Algorithm, Jakub Galgonek, Martin Kruliš and David Hoksza,           

10.00-10.30     P3S: Protein Structure Similarity Search, Jakub Galgonek, Tomas Skopal and David Hoksza,  

10.30-11.00     Stochastic Simulation of the Coagulation Cascade: A Petri Net Based Approach, Davide Castaldi, Daniele Maccagnola, Daniela Mari and Francesco Archetti,


11:00 - 11:30 Coffee Break

11:30 - 13:00  SESSION 2 - Software Platforms for Bioinformatics and Biomedicine

11.30-12.00     Processing the biomedical data on the grid using the UNICORE workflow system, Marcelina Borcz, Rafal Kluszczynski, Katarzyna Skonieczna, Tomasz Grzybowski and Piotr Bała,

12.00-12.30     Multicore and Cloud-based Solutions for Genomic Variant Analysis, Cristina Y. Gonzalez, Marta Bleda, Francisco Salavert, Ruben Sanchez, Joaquin Dopazo and Ignacio Medina,                                  

12.30-13.00     A Novel Implementation of Double Precision and Real Valued ICA Algorithm for Bioinformatics Applications on GPUs, Amin Foshati and Farshad Khunjush,


13:00 - 14:30  Lunch

14:30 - 16:00  SESSION 3 - Grid and Cloud Computing for Life Sciences

14.30-15.10     INVITED TALK: Using Clouds for Scalable Knowledge Discovery Applications, Domenico Talia (University of Calabria and ICAR-CNR, Italy)

15.10-15.40     PROGENIA: an Approach for Grid Interoperability at Workflow level, Maria Mirto, Marco Passante, Giovanni Aloisio

15.40-16.00    PANEL on High Performance Bioinformatics and Biomedicine

                        The goal of the panel is to discuss emerging topics and problems regarding the application of High Performance Computing techniques, such as Grid and Cloud Computing, to biomedical applications, bioinformatics and systems biology.

The panelists will voice their opinions about questions like:

Chairman: Mario Cannataro

Panelists: Francesco Archetti, Piotr Bała, Domenico Talia


HiBB-2012 Home Page